PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0077500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 572aa    MW: 61496.9 Da    PI: 5.1895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0077500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11374421355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        ++h + ErrRR+++++ f  L++++P+        K++Ka+iL +++ Y+k+L+
  ORGLA11G0077500.1 374 KNHVMSERRRREKLKEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 421
                        5899***********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.4E-16117182IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.339371420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-17374439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.99E-14374425No hitNo description
Gene3DG3DSA:4.10.280.103.0E-16375432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-9375421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-14377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MREISGGSSS SLSSGGRFFV PEDRWWSPVV ASRWWAPDPV SRWLGTTGSG TPGLRLLPPS  60
PFLTPDPPPP STCAQVIAVV SSSPLRPSRR RLHPHALTCL QLHTMSSDPV PASPLSPMLP  120
GKSFASNEYV WLSNAQSADR KLFHRALIAK TIVCVPFIMH GVLELGTTDP VSEDPALVDR  180
ITASLWDTPP RAAFSSEAGV ADIVVFEDLD HGNAAVEATT TMVPGEPEPH AVAGGEVAEC  240
ESNAHNDLEQ ITMDDIGELY SLCEELDVLD DDSSSWVADP WSSFQLVPTA EATDVDDAVV  300
AALGAIDGSC RPSPSSFVAW KRTPDSDEVQ AVPLISGEPP QKLLKKAVAG AGAWMNNADG  360
SAATMTTDQG SSIKNHVMSE RRRREKLKEM FLILKSVVPS IHKVDKASIL AETIAYLKEL  420
EKRVEELESS SQPSPRPMET TRRCCKSTGK KVSAGARAKR KAPAPEDTDG ERRHCVSNVN  480
VTIMDNKELL LELQCQWKEL LMTRVFDAIK GVSLDVLSVQ ASTSDGLLGL KIQAKVVVSA  540
AKSSQQICSI FASPAAVEPG MITEALRKAI AS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379384ERRRRE
2380385RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453640.0AC145364.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0062D09, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616671.10.0PREDICTED: anthocyanin regulatory Lc protein
SwissprotP135261e-102ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLI1QZ330.0I1QZ33_ORYGL; Uncharacterized protein
STRINGORGLA11G0077500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-19bHLH family protein